bioinformatics

Extract multiple protein sequences from a Protein Data Bank along with Secondary Structure

Detect large deletions from CIGAR string

Re-use rules and avoid CyclicGraphException with snakemake

Fastest way to add Ns to variable length sequences such that they all equal 150bp

Mapping microarray probes

Trying to predict binding to lipopolysaccharide (LPS)

Error in breseq during running bowtie2

Converting .fasta files to .gff3 files

Find TopHat accepted_hits.bam mapped to transcriptome and genome separetly

How to process mach formatted, imputed genotyes (ENIGMA) with plink

Mauve on Ubuntu 16

Is it possible to pass a string variable to a BLAST search instead of a file?

Calculate (mean) sequence divergence for many sequences

Representing negative data on a log scle in Flow Cytometry

How to order multiple Fasta alignment files

Bam file error : No mithochondrial chromosome detected from the header

From the concatenated fasta file, how to find individual range of locations in each protein sequence

Bioinformatics: How do a contrast Limma with 3 groups (case/control, age and gender)

Unrecognized option: I picard.jar

How to use SAMtool htslib library to read optional info fields

How to use htslib/samtools to transform SAM/BAM reads?

Counting DNA Nucleotides using perl 6

ChemSpider refuses to accept the .MOL file I present it

How to count sequences in a fasta file using Bioperl

How to get taxonomic specific ids for kingdom, phylum, class, order, family, genus and species from taxid?

Biopython upgma tree construction is not giving ultrametric tree

Nucleotides separator in the pairwise sequence alignment bio python

how comparing PQG with PEG and PQA in Blast Algorithm?

How to get sequence description from gi number through biopython?

How to translate multiple fasta sequences?

Building Bowtie index failure (tophat2, bowtie2)

Looking at the results of clustering algorithms on Protein Interaction Networks

If operator inside for loop

Different results with MACS2 when Peakcalling with .bed or .bam

Is it possible to have an additional column of % similarity in the BLAST 2.2.26 output file?

Changing the record id in a FASTA file using BioPython

sort fastq file and keep sequences 15-17 bp in length

Computing pair wise distances for metabolic models

In bioinformatics, what is a singleton?

Beginner GWAS topic: virtual box command line can't find .ped file?

How to fix both the branch length and topology in MrBayes

how to convert a clusterw .dnd file to image (png) file?

How does Biopython determine the root of a phylogenetic tree?

How do I run MetaVelvet? The 'Getting Started' instructions don't work as expected

chip-seq alignment with multimach reads

Multiple sequence alignment. Convert multi-line format to single-line format?

Galaxy localhost reference data uploading

BLAST: blastpgp not producing an output file, unsure if using database flag correctly

How to run Mugsy multiple alignment software on Linux Ubuntu 11.04?

BioPython: Residues size differ from position

Clusters of Orthologous Groups [Software]

Send a Flat file attachment in the workflow in Informatica Developer

How to find ALL optimal local alignments using Smith-Waterman?

Is there a way to retrieve a list of annotations from Apache UIMA rather than using the CAS GUI?

How to convert fasta files (.fa) to gtf files for transcriptome assembly [closed]

Retrieving DNA sequences from a database of protein sequences?

In biopython, how can i get the 100% identity aligment?

Building .sif file from microarray ,tab file with expression valuses and gene id only

segmentation fault with SIFT

Flux simulator genome data processing


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Related Links

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Where can I find instructions on basic RNAseq data analysis? [closed]
Gene Ontology term Level vs. Gene Ontology term Type
Finding RNAs and information in a region
SNP ID conversion

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